So what happens to Virgil, Livia/Eve, and the whole sixth season?

Never happened. And I'm sorry to those who liked Virgil or Eve, but I never felt any connection to those characters myself, and I didn't think that we got a chance to care about them in the few episodes they were in. There are a few fanfics that bring in Virgil in different ways, and I applaud them for that. *g* The characters themselves weren't bad, but just so underdeveloped and, to be blunt, gimmicky - much like the entire sixth season. *shrug*

So... Just Say No to the Sixth Season. Even if Joxer had been frozen with them, if it had turned out like that, I still wouldn't see any redeeming features.